Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4587

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12955 and 12956 are separated by 902 nucleotides mRNA_4587: 12955 - HMMPfam-Complex1_LYR-like-PF13232, at 531,133 to 531,604 12955 mRNA_4588: 12956 - HMMPfam-F-box-like-PF12937,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 532,507 to 535,207 12956

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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530,342 + -0.2
530,346 - -1.3
530,484 + -0.7
530,533 + -0.8
530,637 - +0.2
530,638 - -0.4
530,655 - -0.5
530,792 - -0.7
530,819 + +0.9
531,221 + 12955 mRNA_4587 0.19 -1.2
531,324 + 12955 mRNA_4587 0.40 -1.4
531,375 - 12955 mRNA_4587 0.51 -1.6
531,509 - 12955 mRNA_4587 0.80 -1.9
531,529 - 12955 mRNA_4587 0.84 -0.3
531,678 + +0.3
531,821 + +0.4
532,566 - +2.4

Or see this region's nucleotide sequence