Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4625

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12992 and 12993 are separated by 300 nucleotides12993 and 12994 are separated by 246 nucleotides mRNA_4624: 12992 - Hypothetical Protein, at 628,501 to 629,051 12992 mRNA_4625: 12993 - K09660 MPDU1 mannose-P-dolichol utilization defect 1, at 629,352 to 630,709 12993 mRNA_4626: 12994 - HMMPfam-Beta-lactamase-PF00144,SUPERFAMILY--SSF56601, at 630,956 to 632,424 12994

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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628,566 + 12992 mRNA_4624 0.12 +0.4
628,844 + 12992 mRNA_4624 0.62 -0.1
629,233 - +1.5
629,248 + +0.2
629,258 - +1.9
629,269 - -0.3
629,273 + -1.4
629,409 + +0.0
629,413 + -3.7
629,684 + 12993 mRNA_4625 0.24 +0.4
629,823 - 12993 mRNA_4625 0.35 -2.9
630,253 - 12993 mRNA_4625 0.66 -0.9
630,431 - 12993 mRNA_4625 0.79 +1.2
630,825 + +0.9
630,844 - +0.4
630,860 - -0.2
630,866 - +0.2
630,867 + -0.8
630,876 + -0.4
630,885 + -0.7
630,892 - -1.2
630,912 - +2.5
631,104 + 12994 mRNA_4626 0.10 +0.3
631,108 + 12994 mRNA_4626 0.10 +0.3
631,118 + 12994 mRNA_4626 0.11 +2.2
631,220 - 12994 mRNA_4626 0.18 -0.2
631,224 - 12994 mRNA_4626 0.18 +1.3

Or see this region's nucleotide sequence