Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4649

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13016 and 13017 are separated by 208 nucleotides13017 and 13018 are separated by 273 nucleotides mRNA_4648: 13016 - HMMPfam-Mediator complex subunit Med5-PF08689, at 688,387 to 691,863 13016 mRNA_4649: 13017 - K03934 NDUFS1 NADH dehydrogenase (ubiquinone) Fe-S protein 1, at 692,072 to 694,733 13017 mRNA_4650: 13018 - K02919 RP-L36, MRPL36, rpmJ large subunit ribosomal protein L36, at 695,007 to 695,565 13018

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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691,152 - 13016 mRNA_4648 0.80 +0.4
691,270 + 13016 mRNA_4648 0.83 +0.3
691,311 - 13016 mRNA_4648 0.84 -1.6
691,338 + 13016 mRNA_4648 0.85 -0.6
691,496 + 13016 mRNA_4648 0.89 +0.7
691,623 + +0.5
691,888 - +2.9
692,073 - +0.4
692,077 - -1.5
692,232 + +0.1
694,814 - -1.3
694,831 + -0.9
694,846 + +0.3
694,859 - +0.8
694,861 + -0.1
694,875 - -1.2
694,882 - -1.2
695,125 - 13018 mRNA_4650 0.21 +0.2
695,137 + 13018 mRNA_4650 0.23 -0.6
695,145 + 13018 mRNA_4650 0.25 +1.2
695,286 + 13018 mRNA_4650 0.50 -0.6
695,568 + -0.2
695,607 + +1.7

Or see this region's nucleotide sequence