Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4659

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13026 and 13027 are separated by 752 nucleotides13027 and 13028 are separated by 385 nucleotides mRNA_4658: 13026 - Hypothetical Protein, at 705,825 to 708,792 13026 mRNA_4659: 13027 - KOG1134 Uncharacterized conserved protein, at 709,545 to 713,167 13027 mRNA_4660: 13028 - Interpro Transcription-silencing protein, cryptic loci regulator Clr2, at 713,553 to 716,343 13028

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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708,664 + -0.7
708,686 + +0.1
708,763 - +0.3
708,859 - -0.3
708,962 + +0.0
708,971 - +0.9
708,971 - -2.6
708,977 + +0.8
708,982 + -0.6
708,984 - -1.1
708,993 - +1.3
708,995 + -0.8
708,995 - +0.1
708,995 - -0.6
708,996 - -1.1
708,998 + -1.8
709,007 + +0.2
709,011 + +0.8
709,022 + +0.1
709,028 + +0.2
709,047 + -1.4
709,055 + -0.5
709,061 - -0.4
709,062 + +1.3
709,077 - +0.8
709,077 - +0.4
709,079 + +0.6
709,082 - -0.6
709,104 - -0.2
709,115 + -0.1
709,117 + -1.0
709,119 - -0.1
709,120 + -1.0
709,125 - -0.2
709,128 + -1.4
709,137 - +0.8
709,146 + +0.0
709,187 - +0.9
709,192 + -0.6
709,207 + -0.3
709,207 - -0.0
709,214 + +0.6
709,219 - -0.2
709,219 + +0.1
709,224 + -0.9
709,226 + +0.4
709,230 + -0.9
709,231 - -0.3
709,254 - +2.0
709,256 - -0.9
709,258 + +0.4
709,259 + -0.2
709,261 - -0.7
709,261 - +1.3
709,267 + +0.4
709,267 - +1.1
709,268 + +0.6
709,268 + -0.7
709,269 + +0.1
709,275 + +0.3
709,278 - +0.7
709,279 - -0.3
709,288 - -0.2
709,289 + +0.8
709,289 + -0.2
709,294 + -0.4
709,295 - -1.2
709,305 + -0.7
709,306 - -0.0
709,307 - -0.3
709,310 - -1.8
709,311 - +1.2
709,312 + +0.7
709,336 + +0.1
709,419 - -0.3
709,452 - +1.1
710,141 - 13027 mRNA_4659 0.16 -0.9
711,453 - 13027 mRNA_4659 0.53 -0.1
712,599 + 13027 mRNA_4659 0.84 +0.2
712,884 - -1.4
712,901 - +0.4
712,918 - -0.4
712,932 + -0.9
713,060 + -0.0
713,213 + +0.1
713,215 + -0.3
713,216 - +0.4
713,216 - -1.3
713,223 + +1.6
713,225 - +0.7
713,239 + -1.3
713,244 - +0.1
713,249 - -0.0
713,249 - -0.4
713,301 + +1.2
713,303 + +0.9
713,312 - -1.5
713,326 - +1.1
713,328 - -0.2
713,329 - -0.9
713,331 + +0.6
713,331 + +0.1
713,341 + -0.4
713,348 - -0.8
713,351 + +1.8
713,360 - -0.2
713,367 + -1.2
713,382 - +0.7
713,391 + +1.7
713,487 - +1.1
713,523 - +0.8
713,530 - -0.3
713,695 - -0.4
713,990 - 13028 mRNA_4660 0.16 -2.9
714,137 + 13028 mRNA_4660 0.21 -0.4

Or see this region's nucleotide sequence