Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4678

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13045 and 13046 are separated by 308 nucleotides13046 and 13047 are separated by 962 nucleotides mRNA_4677: 13045 - K10426 DCTN4 dynactin 4, at 751,315 to 753,347 13045 mRNA_4678: 13046 - K11252 H2B histone H2B, at 753,656 to 754,294 13046 mRNA_4679: 13047 - Hypothetical Protein, at 755,257 to 756,395 13047

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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753,365 - -0.0
753,377 + -0.1
753,517 + +1.1
753,557 + +0.7
753,852 - 13046 mRNA_4678 0.31 -0.3
753,969 - 13046 mRNA_4678 0.49 +0.9
754,039 + 13046 mRNA_4678 0.60 +1.1
754,176 + 13046 mRNA_4678 0.81 +0.4
755,170 - -0.1

Or see this region's nucleotide sequence