Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4681

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13049 and 13050 are separated by 760 nucleotides mRNA_4681: 13049 - K01539 ATP1A sodium/potassium-transporting ATPase subunit alpha, at 759,600 to 763,345 13049 mRNA_4682: 13050 - HMMPfam-Tim44-like domain-PF04280,SMART--SM00978,SUPERFAMILY--SSF54427, at 764,106 to 764,879 13050

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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758,719 - +0.6
758,725 + -1.4
758,726 - +1.7
758,728 + +0.5
758,744 + +0.0
758,891 + -1.1
759,001 + -1.7
759,003 - -0.4
759,015 + -1.2
759,027 - -0.2
759,029 - -0.9
759,031 - +0.9
759,158 - -0.2
759,166 + -0.5
759,185 + -1.9
759,214 - -0.4
759,292 - -0.3
759,299 - -1.1
759,335 - -0.3
759,340 - +3.5
759,343 + -2.9
759,357 + +0.3
759,365 + +0.6
760,062 + 13049 mRNA_4681 0.12 +0.8
760,215 + 13049 mRNA_4681 0.16 +0.6
760,818 - 13049 mRNA_4681 0.33 +1.0
761,219 - 13049 mRNA_4681 0.43 +0.8
762,314 + 13049 mRNA_4681 0.72 -0.3
762,564 + 13049 mRNA_4681 0.79 -1.4
762,742 + 13049 mRNA_4681 0.84 +0.9
762,754 + 13049 mRNA_4681 0.84 -0.1
762,873 + 13049 mRNA_4681 0.87 -0.8
762,883 + 13049 mRNA_4681 0.88 +4.0
762,887 + 13049 mRNA_4681 0.88 -0.7
763,284 + -0.8
763,324 + +0.0
763,432 + +0.9
763,469 - +1.1
763,587 + +0.0
763,608 - -0.5
763,890 - -1.3
763,904 + -1.9

Or see this region's nucleotide sequence