Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4703

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13070 and 13071 are separated by 213 nucleotides13071 and 13072 are separated by 154 nucleotides mRNA_4702: 13070 - K00870 E2.7.1.37 protein kinase, at 806,488 to 808,596 13070 mRNA_4703: 13071 - Hypothetical Protein, at 808,810 to 809,148 13071 mRNA_4704: 13072 - Hypothetical Protein, at 809,303 to 810,124 13072

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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807,875 + 13070 mRNA_4702 0.66 +0.5
807,898 + 13070 mRNA_4702 0.67 +0.8
808,003 - 13070 mRNA_4702 0.72 -0.1
808,064 - 13070 mRNA_4702 0.75 -2.3
808,199 + 13070 mRNA_4702 0.81 +1.6
808,216 + 13070 mRNA_4702 0.82 +0.4
808,336 - 13070 mRNA_4702 0.88 +1.2
808,344 - 13070 mRNA_4702 0.88 -1.4
808,357 + 13070 mRNA_4702 0.89 +1.2
808,360 - 13070 mRNA_4702 0.89 +2.1
808,365 + 13070 mRNA_4702 0.89 +1.8
808,370 + 13070 mRNA_4702 0.89 -0.4
808,374 - 13070 mRNA_4702 0.89 +0.3
808,376 - 13070 mRNA_4702 0.90 +0.5
808,481 - +0.5
808,654 + -1.2
808,791 - +0.1
808,791 - -0.8
809,101 + 13071 mRNA_4703 0.86 -0.4
809,109 - 13071 mRNA_4703 0.88 -1.1
809,122 - +0.4
809,149 + +0.4

Or see this region's nucleotide sequence