Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4707

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13074 and 13075 are separated by 355 nucleotides13075 and 13076 are separated by 247 nucleotides mRNA_4706: 13074 - KOG0101 Molecular chaperones HSP70/HSC70, HSP70 superfamily, at 816,383 to 818,450 13074 mRNA_4707: 13075 - KOG4431 Uncharacterized protein, induced by hypoxia , at 818,806 to 819,404 13075 mRNA_4708: 13076 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 819,652 to 821,476 13076

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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818,473 - -0.1
818,486 + -1.0
818,487 - -0.1
818,487 + -0.3
818,495 + -0.5
818,498 + -0.6
818,530 - +0.2
818,639 + -3.0
818,779 - +0.5
818,783 + -0.0
818,784 + +0.0
818,903 - 13075 mRNA_4707 0.16 -1.1
819,086 + 13075 mRNA_4707 0.47 +1.4
819,219 - 13075 mRNA_4707 0.69 -1.1
819,501 - -0.6
819,512 - +0.4
819,516 + +0.9
819,521 - -0.2
819,523 + +0.9
819,534 + +0.0
819,648 - -1.0
819,648 - +0.6
819,781 + +0.3
819,870 + 13076 mRNA_4708 0.12 -0.7
819,949 + 13076 mRNA_4708 0.16 +0.5
819,972 - 13076 mRNA_4708 0.18 -2.3
820,105 - 13076 mRNA_4708 0.25 -0.3
820,237 - 13076 mRNA_4708 0.32 +0.2

Or see this region's nucleotide sequence