Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4731

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13098 and 13099 are separated by 199 nucleotides mRNA_4730: 13098 - K06062 PCAF, KAT2, GCN5 histone acetyltransferase, at 874,263 to 876,540 13098 mRNA_4731: 13099 - K08770 UBC ubiquitin C, at 876,740 to 878,353 13099

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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875,928 + 13098 mRNA_4730 0.73 +1.0
876,202 + 13098 mRNA_4730 0.85 +2.0
876,356 - -1.3
876,517 - +0.9
876,620 + +0.3
876,637 + -0.6
876,643 - +1.6
876,649 - +0.6
876,652 - -1.1
876,656 - -0.9
876,657 + -0.1
876,657 + -0.2
876,665 + +0.2
876,670 + -1.6
876,671 + +0.5
876,677 + +1.4
876,679 - -0.6
876,695 + -2.0
876,698 - +3.0
876,728 - +0.9
876,737 - -0.6
876,757 + +3.1
876,759 - -1.1
876,760 + -0.5
876,769 - +0.9
876,775 - +0.4
876,780 - +0.5
876,793 - -0.4
876,795 - -1.5
876,820 - -0.6
876,836 + +0.5
876,841 - -1.1
876,847 + +1.5
876,851 + -0.2
876,859 - -0.3
876,861 - -0.9
876,869 + -0.9
876,873 + +0.1
876,875 + +0.6
876,891 - -0.3
876,894 + +0.8
876,894 + +0.8
876,897 + +0.7
876,923 + 13099 mRNA_4731 0.11 +0.8
876,926 - 13099 mRNA_4731 0.12 +1.2
876,976 - 13099 mRNA_4731 0.15 +0.4
876,985 + 13099 mRNA_4731 0.15 +1.1
877,032 - 13099 mRNA_4731 0.18 -0.1
877,048 - 13099 mRNA_4731 0.19 +1.2
877,063 - 13099 mRNA_4731 0.20 -2.3
877,064 - 13099 mRNA_4731 0.20 +0.5
877,085 + 13099 mRNA_4731 0.21 +1.1
877,091 + 13099 mRNA_4731 0.22 +1.0
877,227 + 13099 mRNA_4731 0.30 +1.0
877,362 + 13099 mRNA_4731 0.39 -0.0
877,510 - 13099 mRNA_4731 0.48 +1.0
877,525 + 13099 mRNA_4731 0.49 -0.1
877,552 + 13099 mRNA_4731 0.50 +1.5
877,661 + 13099 mRNA_4731 0.57 +0.4
877,793 - 13099 mRNA_4731 0.65 +0.2
877,801 + 13099 mRNA_4731 0.66 -0.5
877,955 + 13099 mRNA_4731 0.75 -0.6
878,214 + +0.7
878,383 + -1.1
878,392 + -0.3
878,399 - +0.0
878,401 - -0.4
878,467 - -2.9
878,497 - +0.3
878,528 - +0.2
878,533 + -0.5
878,549 - -2.0
878,549 - -0.5
878,557 + -1.0
878,585 - +0.3
878,586 + +0.7
878,592 - +0.2
878,600 + +0.3
878,674 + +0.1
878,675 - -1.0
878,705 - +1.5
878,710 - +0.6
878,713 - +0.2
878,715 + -1.3
878,721 - +0.2
878,722 + -0.4
878,729 - +0.1
878,731 + +0.5
878,736 - +0.3
878,737 + +1.5
878,739 - -0.1
878,758 + -0.8
878,758 + +0.1
878,763 + +0.1
878,768 - +0.4
878,775 - -0.7
878,776 + -0.7
878,779 - +2.0
878,779 - -1.5
878,784 + -0.0
878,790 + +1.0
878,791 - -0.3
878,798 - +0.2
878,799 + -0.6
878,808 + +1.1
878,815 - +1.6
878,818 + -1.0
878,818 + +1.8
878,842 + -0.2
878,847 - +0.4
878,899 - -1.9
878,913 - +0.1
878,941 - -0.7
878,953 + +0.1
878,973 + -0.7
879,034 - +1.1
879,076 - -1.4
879,084 + +0.0
879,087 - +0.5
879,088 + -1.5
879,088 + +1.9
879,089 - +0.3
879,090 + -0.5
879,093 + -1.5
879,106 - +0.9
879,112 + +0.8
879,112 + +0.4
879,112 + +0.3
879,116 + +0.8
879,133 + -0.2
879,136 - -1.9
879,145 - +0.6
879,147 - -0.3
879,154 + -0.5
879,157 - +1.0
879,159 - +0.9
879,159 - -0.4
879,161 - -0.7
879,162 - -0.7
879,165 + -1.6
879,172 - +1.7
879,172 - -0.7
879,173 - -0.9
879,174 - -0.2
879,178 + -1.6
879,188 - +0.7
879,188 - +1.3
879,189 + +1.2
879,190 - -0.1
879,193 + -0.0
879,195 - +0.1
879,197 - +0.6
879,197 + +0.8
879,198 - -0.4
879,205 - +0.2
879,212 + +2.4
879,216 + +0.5
879,218 - +0.6
879,225 + +0.4
879,230 + +0.1
879,238 + +0.0
879,239 - +1.6
879,260 + -0.4
879,273 - +1.1
879,282 + +0.7
879,296 - -2.5
879,296 - +0.2
879,305 + +2.1
879,308 - +0.1
879,309 - +0.7
879,323 - +1.6
879,331 - -0.5
879,331 - +0.2

Or see this region's nucleotide sequence