Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4732

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13100 and 13101 are separated by 557 nucleotides mRNA_4732: 13100 - HMMPfam-Major intrinsic protein-PF00230,PRINTS-Major intrinsic protein family signature-PR00783,SUPERFAMILY--SSF81338, at 879,432 to 880,805 13100 mRNA_4733: 13101 - HMMPfam-NmrA-like family-PF05368,SUPERFAMILY--SSF51735, at 881,363 to 882,284 13101

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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878,467 - -2.9
878,497 - +0.3
878,528 - +0.2
878,533 + -0.5
878,549 - -2.0
878,549 - -0.5
878,557 + -1.0
878,585 - +0.3
878,586 + +0.7
878,592 - +0.2
878,600 + +0.3
878,674 + +0.1
878,675 - -1.0
878,705 - +1.5
878,710 - +0.6
878,713 - +0.2
878,715 + -1.3
878,721 - +0.2
878,722 + -0.4
878,729 - +0.1
878,731 + +0.5
878,736 - +0.3
878,737 + +1.5
878,739 - -0.1
878,758 + -0.8
878,758 + +0.1
878,763 + +0.1
878,768 - +0.4
878,775 - -0.7
878,776 + -0.7
878,779 - +2.0
878,779 - -1.5
878,784 + -0.0
878,790 + +1.0
878,791 - -0.3
878,798 - +0.2
878,799 + -0.6
878,808 + +1.1
878,815 - +1.6
878,818 + -1.0
878,818 + +1.8
878,842 + -0.2
878,847 - +0.4
878,899 - -1.9
878,913 - +0.1
878,941 - -0.7
878,953 + +0.1
878,973 + -0.7
879,034 - +1.1
879,076 - -1.4
879,084 + +0.0
879,087 - +0.5
879,088 + -1.5
879,088 + +1.9
879,089 - +0.3
879,090 + -0.5
879,093 + -1.5
879,106 - +0.9
879,112 + +0.8
879,112 + +0.4
879,112 + +0.3
879,116 + +0.8
879,133 + -0.2
879,136 - -1.9
879,145 - +0.6
879,147 - -0.3
879,154 + -0.5
879,157 - +1.0
879,159 - +0.9
879,159 - -0.4
879,161 - -0.7
879,162 - -0.7
879,165 + -1.6
879,172 - +1.7
879,172 - -0.7
879,173 - -0.9
879,174 - -0.2
879,178 + -1.6
879,188 - +0.7
879,188 - +1.3
879,189 + +1.2
879,190 - -0.1
879,193 + -0.0
879,195 - +0.1
879,197 - +0.6
879,197 + +0.8
879,198 - -0.4
879,205 - +0.2
879,212 + +2.4
879,216 + +0.5
879,218 - +0.6
879,225 + +0.4
879,230 + +0.1
879,238 + +0.0
879,239 - +1.6
879,260 + -0.4
879,273 - +1.1
879,282 + +0.7
879,296 - -2.5
879,296 - +0.2
879,305 + +2.1
879,308 - +0.1
879,309 - +0.7
879,323 - +1.6
879,331 - -0.5
879,331 - +0.2
879,360 - +0.6
879,370 + +0.2
879,370 - +0.2
879,401 + +0.1
879,417 - +1.4
879,419 + -0.4
879,423 - +2.1
879,423 + -0.0
879,427 - +0.9
879,430 + +0.4
879,433 + +1.2
879,439 - +1.1
879,439 - +0.5
879,441 - -0.7
879,444 - -0.2
879,444 + -1.1
879,458 - +0.2
879,474 + -0.2
879,480 - -1.0
879,484 + +1.5
879,597 - 13100 mRNA_4732 0.12 -0.6
879,609 + 13100 mRNA_4732 0.13 -1.4
879,613 - 13100 mRNA_4732 0.13 +1.4
879,616 - 13100 mRNA_4732 0.13 +0.7
879,626 + 13100 mRNA_4732 0.14 -1.1
879,635 + 13100 mRNA_4732 0.15 +1.4
879,649 + 13100 mRNA_4732 0.16 -1.6
879,768 - 13100 mRNA_4732 0.24 -0.1
879,895 - 13100 mRNA_4732 0.34 -1.7
879,916 - 13100 mRNA_4732 0.35 -1.9
879,925 + 13100 mRNA_4732 0.36 -1.8
879,929 - 13100 mRNA_4732 0.36 -0.5
880,301 - 13100 mRNA_4732 0.63 -0.1
880,330 - 13100 mRNA_4732 0.65 -2.0
880,336 - 13100 mRNA_4732 0.66 -0.3
880,467 - 13100 mRNA_4732 0.75 +0.5
880,817 - -1.0
881,044 - -3.0
881,045 + +0.8
881,048 + -2.9
881,086 - +0.3
881,159 - -0.5
881,164 - +0.2
881,171 - -0.9
881,184 + +0.3
881,185 + -1.7
881,225 + +1.3
881,243 + -0.5
881,257 - -0.7
881,293 - +0.4
881,428 + -0.4
881,506 - 13101 mRNA_4733 0.16 +0.5
881,525 - 13101 mRNA_4733 0.18 +0.5
881,791 - 13101 mRNA_4733 0.46 -1.8

Or see this region's nucleotide sequence