Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4745

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13112 and 13113 are separated by 525 nucleotides13113 and 13114 are separated by 290 nucleotides mRNA_4744: 13112 - HMMPfam-Uncharacterized alpha/beta hydrolase domain (DUF2235)-PF09994, at 906,003 to 908,213 13112 mRNA_4745: 13113 - K17086 TM9SF2_4 transmembrane 9 superfamily member 2/4, at 908,739 to 911,438 13113 mRNA_4746: 13114 - Hypothetical Protein, at 911,729 to 913,359 13114

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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907,773 - 13112 mRNA_4744 0.80 -2.3
907,807 - 13112 mRNA_4744 0.82 -0.3
907,816 + 13112 mRNA_4744 0.82 -0.6
907,949 + 13112 mRNA_4744 0.88 +0.2
908,191 - +1.2
908,288 + +0.6
908,444 + +0.9
908,605 + -1.7
908,674 + +0.3
908,682 - -0.0
908,827 + -1.7
908,963 + -0.4
909,068 + 13113 mRNA_4745 0.12 +3.9
909,151 - 13113 mRNA_4745 0.15 -0.3
909,331 + 13113 mRNA_4745 0.22 -0.1
909,477 - 13113 mRNA_4745 0.27 -0.2
909,602 + 13113 mRNA_4745 0.32 -0.3
909,607 + 13113 mRNA_4745 0.32 +0.7
909,654 + 13113 mRNA_4745 0.34 -0.5
909,710 - 13113 mRNA_4745 0.36 +0.1
909,801 - 13113 mRNA_4745 0.39 -0.5
909,816 - 13113 mRNA_4745 0.40 -2.2
909,850 + 13113 mRNA_4745 0.41 +0.2
909,897 - 13113 mRNA_4745 0.43 +0.4
909,974 - 13113 mRNA_4745 0.46 -1.0
909,980 - 13113 mRNA_4745 0.46 +0.1
910,011 + 13113 mRNA_4745 0.47 +0.2
910,117 + 13113 mRNA_4745 0.51 -0.4
910,278 + 13113 mRNA_4745 0.57 -0.3
910,315 - 13113 mRNA_4745 0.58 +0.8
910,335 - 13113 mRNA_4745 0.59 -0.8
910,585 - 13113 mRNA_4745 0.68 +0.4
910,627 - 13113 mRNA_4745 0.70 +0.5
910,935 + 13113 mRNA_4745 0.81 +0.2
911,021 - 13113 mRNA_4745 0.85 +0.5
911,092 + 13113 mRNA_4745 0.87 -0.2
911,287 + +3.1
911,300 + +1.4
911,352 - +0.2
911,442 + +0.3
911,475 - -0.0
911,482 + +0.0
911,578 + +0.9
911,580 - -0.1
911,591 - +0.9
911,595 + +1.1
911,598 - +0.4
911,599 + +2.3
911,613 - +0.5
911,630 + -0.3
911,754 - +2.0
911,759 - +1.1
911,760 + +0.1
911,782 - -1.4
911,782 + -2.6
911,811 + -1.6
911,871 + -0.4
912,027 + 13114 mRNA_4746 0.18 +1.7
912,071 - 13114 mRNA_4746 0.21 +0.9
912,085 - 13114 mRNA_4746 0.22 -0.3
912,220 - 13114 mRNA_4746 0.30 +1.4
912,332 - 13114 mRNA_4746 0.37 +1.2

Or see this region's nucleotide sequence