Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4765

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13132 and 13133 are separated by 279 nucleotides13133 and 13134 are separated by 239 nucleotides mRNA_4764: 13132 - K12842 SR140 U2-associated protein SR140, at 954,648 to 957,720 13132 mRNA_4765: 13133 - SUPERFAMILY--SSF52058, at 958,000 to 961,527 13133 mRNA_4766: 13134 - BLAST ribonuclease e [Moniliophthora roreri MCA 2997], at 961,767 to 963,160 13134

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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957,209 + 13132 mRNA_4764 0.83 -0.7
957,506 + +0.2
957,617 - -0.6
957,746 + +1.9
957,789 - -0.1
957,789 - +0.3
957,873 - +0.3
957,880 - -1.5
957,915 - +1.4
957,936 + +0.1
958,033 + +0.7
958,213 + +1.5
958,218 - -0.7
958,225 + -0.7
958,228 - +0.5
958,234 - -0.7
958,547 + 13133 mRNA_4765 0.16 +0.2
958,656 - 13133 mRNA_4765 0.19 +0.2
958,679 + 13133 mRNA_4765 0.19 +0.3
958,964 + 13133 mRNA_4765 0.27 -1.0
959,148 - 13133 mRNA_4765 0.33 +0.6
959,240 + 13133 mRNA_4765 0.35 -1.1
959,249 + 13133 mRNA_4765 0.35 +0.4
959,539 - 13133 mRNA_4765 0.44 +0.8
959,547 + 13133 mRNA_4765 0.44 +2.9
959,727 + 13133 mRNA_4765 0.49 -0.8
959,993 + 13133 mRNA_4765 0.56 -1.1
959,996 + 13133 mRNA_4765 0.57 -0.1
960,016 + 13133 mRNA_4765 0.57 +1.9
960,019 - 13133 mRNA_4765 0.57 -1.4
960,092 + 13133 mRNA_4765 0.59 +1.1
960,094 + 13133 mRNA_4765 0.59 -0.2
960,133 + 13133 mRNA_4765 0.60 -0.1
960,147 - 13133 mRNA_4765 0.61 -0.3
960,147 - 13133 mRNA_4765 0.61 -0.4
960,153 + 13133 mRNA_4765 0.61 -2.4
960,153 + 13133 mRNA_4765 0.61 -1.5
960,153 + 13133 mRNA_4765 0.61 +0.5
960,153 + 13133 mRNA_4765 0.61 +0.1
960,153 + 13133 mRNA_4765 0.61 +0.8
960,198 - 13133 mRNA_4765 0.62 +0.7
960,270 - 13133 mRNA_4765 0.64 -3.1
960,421 - 13133 mRNA_4765 0.69 -0.5
960,449 + 13133 mRNA_4765 0.69 -1.3
960,536 + 13133 mRNA_4765 0.72 -1.1
960,597 - 13133 mRNA_4765 0.74 +0.5
960,635 + 13133 mRNA_4765 0.75 +0.3
960,681 + 13133 mRNA_4765 0.76 +0.8
960,717 + 13133 mRNA_4765 0.77 -0.3
961,166 - 13133 mRNA_4765 0.90 +0.0
961,475 + +0.2
961,563 - +1.3
961,649 + -0.5
961,652 - +0.4
961,909 + 13134 mRNA_4766 0.10 -0.1
961,988 - 13134 mRNA_4766 0.16 +0.0
961,988 - 13134 mRNA_4766 0.16 -0.1
962,424 - 13134 mRNA_4766 0.47 +0.4

Or see this region's nucleotide sequence