Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4816

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13183 and 13184 are separated by 474 nucleotides13184 and 13185 are separated by 184 nucleotides mRNA_4815: 13183 - SUPERFAMILY--SSF143575, at 1,075,987 to 1,081,197 13183 mRNA_4816: 13184 - Interpro Protein of unknown function (DUF1777), at 1,081,672 to 1,082,583 13184 mRNA_4817: 13185 - K09966 K09966 uncharacterized protein, at 1,082,768 to 1,083,677 13185

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,080,756 - +0.7
1,080,907 + +1.8
1,080,923 + -0.3
1,081,064 - -1.9
1,081,084 - +0.0
1,081,106 - +0.7
1,081,181 - +0.4
1,081,208 + +0.4
1,081,234 + +0.5
1,081,359 - +0.6
1,081,360 + -0.3
1,081,367 + -0.5
1,082,685 + +0.3
1,083,078 - 13185 mRNA_4817 0.34 +0.5
1,083,103 - 13185 mRNA_4817 0.37 -0.4
1,083,210 - 13185 mRNA_4817 0.49 -0.1
1,083,503 + 13185 mRNA_4817 0.81 +0.4

Or see this region's nucleotide sequence