Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4831

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13198 and 13199 are separated by 124 nucleotides13199 and 13200 are separated by 154 nucleotides mRNA_4830: 13198 - K03066 PSMC5, RPT6 26S proteasome regulatory subunit T6, at 1,106,842 to 1,108,313 13198 mRNA_4831: 13199 - K11559 mis12, MTW1 kinetochore protein Mis12/MTW1, at 1,108,438 to 1,109,604 13199 mRNA_4832: 13200 - KOG4168 Predicted RNA polymerase III subunit C17, at 1,109,759 to 1,110,628 13200

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,108,439 - -2.0
1,108,448 - -0.1
1,109,654 - +0.4
1,109,684 - +0.0
1,109,686 - -2.2

Or see this region's nucleotide sequence