Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4863

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13230 and 13231 are separated by 217 nucleotides13231 and 13232 are separated by 146 nucleotides mRNA_4862: 13230 - K00817 hisC histidinol-phosphate aminotransferase, at 1,167,194 to 1,168,610 13230 mRNA_4863: 13231 - KOG0645 WD40 repeat protein, at 1,168,828 to 1,170,396 13231 mRNA_4864: 13232 - KOG0603 Ribosomal protein S6 kinase, at 1,170,543 to 1,172,403 13232

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,168,789 + +1.5
1,168,795 + -0.9
1,169,369 + 13231 mRNA_4863 0.34 -1.4
1,170,428 - -0.6
1,171,274 - 13232 mRNA_4864 0.39 +1.7
1,171,286 - 13232 mRNA_4864 0.40 +0.6

Or see this region's nucleotide sequence