Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4885

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13252 and 13253 are separated by 280 nucleotides13253 and 13254 are separated by 249 nucleotides mRNA_4884: 13252 - K07555 ATPeAF1, ATPAF1, ATP11 ATP synthase mitochondrial F1 complex assembly factor 1, at 1,218,139 to 1,219,355 13252 mRNA_4885: 13253 - K03105 SRP19 signal recognition particle subunit SRP19, at 1,219,636 to 1,220,593 13253 mRNA_4886: 13254 - Hypothetical Protein, at 1,220,843 to 1,222,544 13254

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,219,458 + +0.1
1,219,588 + +1.0
1,219,598 - +0.6
1,219,601 + -0.2
1,219,757 + 13253 mRNA_4885 0.13 -0.3
1,220,347 - 13253 mRNA_4885 0.74 -0.1
1,220,793 + -0.2
1,221,108 - 13254 mRNA_4886 0.16 -0.2
1,221,525 + 13254 mRNA_4886 0.40 +0.9

Or see this region's nucleotide sequence