Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4911

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13278 and 13279 are separated by 300 nucleotides13279 and 13280 are separated by 59 nucleotides mRNA_4910: 13278 - K14555 UTP13, TBL3 U3 small nucleolar RNA-associated protein 13, at 1,284,802 to 1,288,001 13278 mRNA_4911: 13279 - BLAST pre-mrna-splicing factor cwc22 [Moniliophthora ro..., at 1,288,302 to 1,289,594 13279 mRNA_4912: 13280 - KOG3309 Ferredoxin, at 1,289,654 to 1,291,365 13280

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,288,055 + +1.9
1,288,179 - +0.4
1,288,201 - +0.4
1,288,206 - +0.9
1,288,329 - +0.6
1,288,669 + 13279 mRNA_4911 0.28 +0.1
1,288,810 - 13279 mRNA_4911 0.39 +0.2
1,289,083 + 13279 mRNA_4911 0.60 -0.6
1,289,095 + 13279 mRNA_4911 0.61 +0.3
1,289,546 - +2.8
1,289,694 - -0.5
1,289,716 - -0.2
1,289,951 + 13280 mRNA_4912 0.17 -0.5
1,290,253 + 13280 mRNA_4912 0.35 +1.3

Or see this region's nucleotide sequence