Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4931

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13298 and 13299 are separated by 333 nucleotides13299 and 13300 are separated by 499 nucleotides mRNA_4930: 13298 - HMMPfam-Ubiquitin family-PF00240,HMMPfam-BAG domain-PF02179,ProSiteProfiles-Ubiquitin domain profile.-PS50053,ProSiteProfiles-BAG domain profile.-PS51035,SMART-BAG domains, present in regulator of Hsp70 proteins-SM00264,SUPERFAMILY--SSF54236,SUPERFAMILY--SSF63491, at 1,342,722 to 1,344,500 13298 mRNA_4931: 13299 - ProSiteProfiles-BTB domain profile.-PS50097, at 1,344,834 to 1,346,285 13299 mRNA_4932: 13300 - K11547 NDC80, HEC1, TID3 kinetochore protein NDC80, at 1,346,785 to 1,349,520 13300

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,344,014 + 13298 mRNA_4930 0.73 +0.9
1,344,423 - +0.1
1,344,619 - -0.4
1,344,743 + -0.0
1,345,334 + 13299 mRNA_4931 0.34 +2.0
1,345,373 + 13299 mRNA_4931 0.37 -0.0
1,345,471 + 13299 mRNA_4931 0.44 +0.3
1,345,776 + 13299 mRNA_4931 0.65 -0.8
1,345,776 - 13299 mRNA_4931 0.65 +0.4
1,345,915 + 13299 mRNA_4931 0.74 +0.0
1,345,929 - 13299 mRNA_4931 0.75 +2.1
1,346,161 - -0.2
1,346,643 - +0.2
1,346,657 + +0.2

Or see this region's nucleotide sequence