Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4956

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13323 and 13324 are separated by 305 nucleotides13324 and 13325 are separated by 578 nucleotides mRNA_4955: 13323 - K20306 TRAPPC9, TRS120 trafficking protein particle complex subunit 9, at 1,393,172 to 1,398,147 13323 mRNA_4956: 13324 - HMMPfam-SMI1 / KNR4 family (SUKH-1)-PF09346, at 1,398,453 to 1,400,732 13324 mRNA_4957: 13325 - BLAST Ribonuclease P protein subunit p20 [Hypsizygus marmor..., at 1,401,311 to 1,402,401 13325

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,398,251 - +0.2
1,398,383 + -0.0
1,398,564 - -2.2
1,398,567 + -1.6
1,399,384 - 13324 mRNA_4956 0.41 -1.8
1,399,659 - 13324 mRNA_4956 0.53 -1.3
1,399,920 + 13324 mRNA_4956 0.64 +1.3
1,400,083 + 13324 mRNA_4956 0.71 -1.8
1,400,659 - -1.8
1,400,670 + -1.2
1,400,943 - -1.4
1,401,100 - -0.6
1,401,227 + -1.0
1,401,241 - -0.9
1,401,252 + +0.6

Or see this region's nucleotide sequence