Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4966

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13333 and 13334 are separated by 243 nucleotides13334 and 13335 are separated by 874 nucleotides mRNA_4965: 13333 - K15156 MED14, RGR1 mediator of RNA polymerase II transcription subunit 14, at 1,421,714 to 1,425,387 13333 mRNA_4966: 13334 - Hypothetical Protein, at 1,425,631 to 1,426,865 13334 mRNA_4967: 13335 - K11593 ELF2C, AGO eukaryotic translation initiation factor 2C, at 1,427,740 to 1,431,350 13335

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,424,796 + 13333 mRNA_4965 0.84 -0.9
1,425,062 - -0.7
1,426,093 + 13334 mRNA_4966 0.37 -0.4
1,426,548 - 13334 mRNA_4966 0.74 +1.4
1,426,673 - 13334 mRNA_4966 0.84 +0.4
1,426,780 - +1.8
1,426,833 - +0.4
1,426,970 + +1.5
1,427,110 + +1.9
1,427,110 + -1.1
1,427,118 + -0.4
1,427,247 - +0.0
1,427,251 + +0.4
1,427,252 - +0.7
1,427,293 + +0.1
1,427,294 + -0.3
1,427,399 + -0.9
1,427,414 + +0.5
1,427,627 - +0.6
1,427,668 + +0.7
1,427,679 + -0.1
1,427,695 - -0.9
1,427,703 + +1.2
1,427,706 - +0.9
1,427,839 - -0.9
1,427,840 - +0.8
1,427,848 - -1.3
1,427,861 + -0.2

Or see this region's nucleotide sequence