Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4978

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13345 and 13346 are separated by 883 nucleotides13346 and 13347 are separated by 113 nucleotides mRNA_4977: 13345 - Hypothetical Protein, at 1,459,156 to 1,464,394 13345 mRNA_4978: 13346 - K12883 NCBP2, CBP20 nuclear cap-binding protein subunit 2, at 1,465,278 to 1,466,176 13346 mRNA_4979: 13347 - K03575 mutY A/G-specific adenine glycosylase, at 1,466,290 to 1,468,594 13347

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,464,289 - -0.1
1,464,329 - +0.5
1,464,333 - -0.4
1,464,412 - +0.2
1,464,691 - -0.7
1,464,986 + -0.2
1,465,133 - -0.6
1,465,140 + -1.3
1,465,288 + +0.7
1,465,295 + -1.7
1,465,322 + -2.7
1,465,431 + 13346 mRNA_4978 0.17 -1.9
1,465,546 - 13346 mRNA_4978 0.30 -2.3
1,465,984 - 13346 mRNA_4978 0.79 +1.6
1,465,995 + 13346 mRNA_4978 0.80 -2.4
1,466,005 + 13346 mRNA_4978 0.81 -1.2
1,466,151 + +0.4
1,466,568 - 13347 mRNA_4979 0.12 -1.5
1,466,604 - 13347 mRNA_4979 0.14 +1.6
1,466,605 + 13347 mRNA_4979 0.14 +1.1
1,467,168 + 13347 mRNA_4979 0.38 +2.4

Or see this region's nucleotide sequence