Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5019

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13386 and 13387 are separated by 70 nucleotides13387 and 13388 are separated by 326 nucleotides mRNA_5018: 13386 - Hypothetical Protein, at 1,558,748 to 1,560,542 13386 mRNA_5019: 13387 - HMMPfam-Basic region leucine zipper-PF07716,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 1,560,613 to 1,563,320 13387 mRNA_5020: 13388 - K20178 VPS8 vacuolar protein sorting-associated protein 8, at 1,563,647 to 1,569,301 13388

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,559,674 - 13386 mRNA_5018 0.52 -1.0
1,559,882 + 13386 mRNA_5018 0.63 -0.8
1,560,045 + 13386 mRNA_5018 0.72 -0.0
1,560,049 + 13386 mRNA_5018 0.72 -0.1
1,560,318 - 13386 mRNA_5018 0.87 +1.4
1,560,326 - 13386 mRNA_5018 0.88 -0.5
1,560,331 + 13386 mRNA_5018 0.88 +0.3
1,560,346 + 13386 mRNA_5018 0.89 -0.2
1,560,425 + -0.1
1,560,459 - +2.2
1,560,460 - -0.8
1,560,460 + -3.8
1,560,461 + +0.3
1,560,465 + +0.5
1,560,467 - +0.3
1,560,470 - +0.4
1,560,474 - -0.4
1,560,478 - +0.4
1,560,479 - -1.5
1,560,480 + +0.3
1,560,481 + +0.6
1,560,481 + -0.5
1,560,482 - -0.4
1,560,486 + +0.4
1,560,489 - +0.4
1,560,491 - -1.3
1,560,494 + +1.4
1,560,495 - +1.0
1,560,496 + +0.4
1,560,498 + +0.6
1,560,499 + +2.1
1,560,500 - -0.6
1,560,503 + -1.8
1,560,518 + -1.5
1,560,518 + -2.3
1,560,635 - +1.3
1,560,639 + +0.2
1,560,647 + -0.2
1,560,658 + +0.8
1,560,669 + +2.0
1,560,669 - +1.3
1,560,798 + +0.5
1,560,801 - -1.3
1,560,925 - 13387 mRNA_5019 0.12 +1.1
1,560,928 + 13387 mRNA_5019 0.12 +1.3
1,560,939 + 13387 mRNA_5019 0.12 -0.2
1,560,940 + 13387 mRNA_5019 0.12 +1.9
1,560,956 - 13387 mRNA_5019 0.13 -0.3
1,560,963 - 13387 mRNA_5019 0.13 +1.0
1,560,979 - 13387 mRNA_5019 0.14 -0.2
1,561,014 - 13387 mRNA_5019 0.15 -0.5
1,561,096 - 13387 mRNA_5019 0.18 +0.3
1,561,105 + 13387 mRNA_5019 0.18 +0.7
1,561,118 + 13387 mRNA_5019 0.19 -0.0
1,561,124 - 13387 mRNA_5019 0.19 +0.5
1,561,248 - 13387 mRNA_5019 0.23 +1.1
1,561,285 - 13387 mRNA_5019 0.25 -0.7
1,561,380 + 13387 mRNA_5019 0.28 +0.6
1,561,394 + 13387 mRNA_5019 0.29 -1.2
1,561,396 + 13387 mRNA_5019 0.29 +0.0
1,561,411 - 13387 mRNA_5019 0.29 -0.8
1,561,540 - 13387 mRNA_5019 0.34 +0.4
1,561,543 + 13387 mRNA_5019 0.34 -0.8
1,561,991 - 13387 mRNA_5019 0.51 -0.8
1,562,273 + 13387 mRNA_5019 0.61 +0.7
1,562,278 - 13387 mRNA_5019 0.61 -0.8
1,563,267 - +1.5
1,563,274 + -1.1
1,563,281 + +0.6
1,563,285 - -1.1
1,563,413 - +0.2
1,563,534 - +0.1
1,563,558 + +0.1
1,563,581 + +0.4
1,563,862 - -0.5
1,564,025 - +0.2

Or see this region's nucleotide sequence