Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5057

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13424 and 13425 are separated by 782 nucleotides13425 and 13426 are separated by 218 nucleotides mRNA_5056: 13424 - K02137 ATPeF0O, ATP5O, ATP5 F-type H+-transporting ATPase subunit O, at 1,645,555 to 1,646,643 13424 mRNA_5057: 13425 - K03252 EIF3C translation initiation factor 3 subunit C, at 1,647,426 to 1,650,006 13425 mRNA_5058: 13426 - K07249 E1.2.1.36 retinal dehydrogenase, at 1,650,225 to 1,652,548 13426

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,646,537 - -4.6
1,646,684 - -1.5
1,646,694 - -1.1
1,646,722 - +0.1
1,646,728 - -0.0
1,646,732 - +1.0
1,649,924 + -1.1
1,650,089 + -0.7
1,650,120 + +0.0
1,650,222 - +0.4
1,650,235 + -2.9
1,650,237 + -1.4
1,650,922 - 13426 mRNA_5058 0.30 -2.5
1,650,970 + 13426 mRNA_5058 0.32 -3.1
1,650,976 - 13426 mRNA_5058 0.32 -3.7

Or see this region's nucleotide sequence