Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5165

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13532 and 13533 are separated by 504 nucleotides13533 and 13534 are separated by 648 nucleotides mRNA_5164: 13532 - HMMPfam-Beta-lactamase superfamily domain-PF12706,SMART-Metallo-beta-lactamase superfamily-SM00849,SUPERFAMILY--SSF56281, at 50,171 to 51,821 13532 mRNA_5165: 13533 - Hypothetical Protein, at 52,326 to 52,658 13533 mRNA_5166: 13534 - KOG0590 Checkpoint kinase and related serine/threonine protein kinases, at 53,307 to 58,220 13534

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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51,441 + 13532 mRNA_5164 0.77 +0.1
51,838 + +1.2
51,855 + +0.1
51,875 - -1.0
51,878 - -1.5
51,881 - -0.5
51,939 + +1.3
51,959 + +0.4
52,043 - +2.9
52,043 - +0.0
52,057 + -0.4
52,061 - +0.5
52,070 + -1.1
52,071 + +0.8
52,073 - -1.2
52,087 - +2.2
52,203 + -1.3
52,228 - -0.7
52,359 + -0.3
52,371 - 13533 mRNA_5165 0.14 -2.4
52,372 + 13533 mRNA_5165 0.14 -1.3
52,438 + 13533 mRNA_5165 0.34 -1.5
52,453 + 13533 mRNA_5165 0.38 -0.7
52,460 - 13533 mRNA_5165 0.40 +0.5
52,486 - 13533 mRNA_5165 0.48 +0.3
52,507 - 13533 mRNA_5165 0.54 -0.6
52,510 - 13533 mRNA_5165 0.55 +0.3
52,510 - 13533 mRNA_5165 0.55 -0.6
52,517 + 13533 mRNA_5165 0.57 -0.9
52,520 + 13533 mRNA_5165 0.58 +1.2
52,522 + 13533 mRNA_5165 0.59 +1.4
52,523 + 13533 mRNA_5165 0.59 +1.7
52,524 - 13533 mRNA_5165 0.59 +0.6
52,528 + 13533 mRNA_5165 0.61 +1.7
52,530 - 13533 mRNA_5165 0.61 -0.3
52,536 + 13533 mRNA_5165 0.63 +0.5
52,536 - 13533 mRNA_5165 0.63 -0.7
52,538 - 13533 mRNA_5165 0.64 +0.2
52,542 + 13533 mRNA_5165 0.65 -0.4
52,543 + 13533 mRNA_5165 0.65 +0.0
52,560 + 13533 mRNA_5165 0.70 -0.0
52,560 + 13533 mRNA_5165 0.70 +2.0
52,561 + 13533 mRNA_5165 0.71 -0.6
52,567 - 13533 mRNA_5165 0.72 -0.0
52,574 - 13533 mRNA_5165 0.74 -0.8
52,577 + 13533 mRNA_5165 0.75 -1.7
52,581 - 13533 mRNA_5165 0.77 -0.2
52,582 + 13533 mRNA_5165 0.77 -0.3
52,583 - 13533 mRNA_5165 0.77 +1.4
52,584 + 13533 mRNA_5165 0.77 +0.1
52,586 + 13533 mRNA_5165 0.78 +1.2
52,596 - 13533 mRNA_5165 0.81 +1.8
52,603 - 13533 mRNA_5165 0.83 +0.8
52,648 - +0.3
52,814 + +0.0
52,957 - -1.5
53,154 + -1.2

Or see this region's nucleotide sequence