Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5167

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13534 and 13535 are separated by 561 nucleotides mRNA_5166: 13534 - KOG0590 Checkpoint kinase and related serine/threonine protein kinases, at 53,307 to 58,220 13534 mRNA_5167: 13535 - Hypothetical Protein, at 58,782 to 59,470 13535

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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57,858 - -1.3
57,867 + -0.8
57,896 + -1.1
58,295 - -0.9
58,464 + +0.1
58,586 - +0.3
58,589 - -0.3
58,613 - -1.2
58,633 - -0.9
58,734 + -0.2
59,032 - 13535 mRNA_5167 0.36 -1.9
59,174 + 13535 mRNA_5167 0.57 +1.2
59,187 + 13535 mRNA_5167 0.59 +1.1
59,189 + 13535 mRNA_5167 0.59 +1.2
59,350 + 13535 mRNA_5167 0.82 -0.3
59,461 + -2.0
59,493 - -0.0
59,495 - -0.9
59,647 - -0.1
59,656 - +1.0
59,658 - -0.2
59,687 - +0.1
59,691 - +0.3
59,723 - -0.2
59,794 - +0.5
59,803 - +0.3
59,955 - +0.2
60,199 - -0.2
60,240 + +0.6
60,250 - -0.2
60,289 + +0.3

Or see this region's nucleotide sequence