Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5194

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13561 and 13562 are separated by 891 nucleotides13562 and 13563 are separated by 697 nucleotides mRNA_5193: 13561 - KOG0253 Synaptic vesicle transporter SV2 (major facilitator superfamily), at 119,123 to 121,882 13561 mRNA_5194: 13562 - K00002 AKR1A1, adh alcohol dehydrogenase (NADP+), at 122,774 to 124,635 13562 mRNA_5195: 13563 - KOG0814 Glyoxylase, at 125,333 to 126,456 13563

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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121,975 - -2.0
121,978 + -1.2
121,994 - +0.7
122,124 - +1.2
122,163 + -1.5
122,163 + -1.6
122,179 + -0.6
122,191 + -0.5
122,192 + +0.4
122,269 - -0.2
122,274 - -2.3
122,274 - +0.5
122,280 - -0.8
122,280 + -1.2
122,404 - -1.2
122,445 - -0.5
122,468 + +0.1
122,469 - -0.0
122,473 + -0.9
122,474 + -0.2
122,518 - -0.9
122,519 + +0.2
122,546 - -0.6
122,566 - -1.7
122,570 + +0.6
122,572 + -0.5
122,592 - -0.3
122,595 + -0.4
122,601 + +0.6
122,608 - +3.4
122,625 + -0.3
122,757 + -1.4
122,909 + -0.2
122,912 + +1.4
123,451 + 13562 mRNA_5194 0.36 +0.9
123,451 - 13562 mRNA_5194 0.36 +0.5
123,658 + 13562 mRNA_5194 0.47 +1.2
124,022 - 13562 mRNA_5194 0.67 +0.8
124,022 - 13562 mRNA_5194 0.67 +0.2
124,052 - 13562 mRNA_5194 0.69 +0.2
124,183 + 13562 mRNA_5194 0.76 +2.4
124,241 - 13562 mRNA_5194 0.79 +1.7
124,511 - -0.2
124,556 - -1.2
124,583 - +0.2
124,586 - +0.7
124,591 - -1.5
124,616 + -0.0
124,624 - +0.2
124,645 + +0.3
124,732 - +0.4
124,773 + -1.1
124,775 + -0.1
124,775 + -0.0
124,776 - -0.4
124,781 + -0.2
124,784 - +1.2
124,788 + +0.3
124,798 + +0.8
124,798 + +0.1
124,801 - -0.7
124,803 + -0.9
124,805 - -0.2
124,807 + -1.7
124,812 + +0.1
124,896 + -0.4
124,927 + -1.6
124,941 - -0.2
124,961 - +1.5
124,963 + -1.5
124,968 - -0.4
124,968 + +0.3
124,968 + +1.5
124,970 - -0.8
124,972 + +0.4
124,975 + +0.5
124,983 + +0.8
124,984 + +0.2
125,005 - -0.4
125,016 + -0.7
125,040 - +0.2
125,043 - -1.6
125,050 + -0.3
125,223 + -0.1
125,227 + +0.2

Or see this region's nucleotide sequence