Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5200

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13567 and 13568 are separated by 303 nucleotides13568 and 13569 are separated by 769 nucleotides mRNA_5199: 13567 - K01210 E3.2.1.58 glucan 1,3-beta-glucosidase, at 133,607 to 137,030 13567 mRNA_5200: 13568 - Hypothetical Protein, at 137,334 to 138,235 13568 mRNA_5201: 13569 - K02304 MET8 precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase, at 139,005 to 139,988 13569

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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136,361 - 13567 mRNA_5199 0.80 +0.6
136,545 + 13567 mRNA_5199 0.86 +0.7
136,567 + 13567 mRNA_5199 0.86 +0.2
136,851 + +0.1
136,898 + +0.2
137,007 - +1.2
137,161 + +0.3
137,172 - -0.6
137,305 + +0.1
137,438 + 13568 mRNA_5200 0.12 +0.3
137,449 + 13568 mRNA_5200 0.13 -0.4
137,454 - 13568 mRNA_5200 0.13 +0.9
137,458 - 13568 mRNA_5200 0.14 -1.8
137,480 - 13568 mRNA_5200 0.16 -1.6
137,482 + 13568 mRNA_5200 0.16 +1.1
137,519 + 13568 mRNA_5200 0.21 -0.4
137,589 + 13568 mRNA_5200 0.28 -0.6
137,594 + 13568 mRNA_5200 0.29 -1.6
137,610 + 13568 mRNA_5200 0.31 -0.2
137,687 + 13568 mRNA_5200 0.39 +0.6
137,909 + 13568 mRNA_5200 0.64 -0.9
138,022 - 13568 mRNA_5200 0.76 +1.2
138,178 + -1.0
138,389 - +0.2
138,755 - -2.4
139,075 - -1.4
139,208 - 13569 mRNA_5201 0.21 -1.9

Or see this region's nucleotide sequence