Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5224

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13591 and 13592 are separated by 324 nucleotides13592 and 13593 are separated by 264 nucleotides mRNA_5223: 13591 - Hypothetical Protein, at 189,064 to 190,572 13591 mRNA_5224: 13592 - KOG0001 Ubiquitin and ubiquitin-like proteins, at 190,897 to 192,363 13592 mRNA_5225: 13593 - HMMPfam-Glycosyl hydrolases family 16-PF00722,SUPERFAMILY--SSF49899, at 192,628 to 196,368 13593

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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190,047 - 13591 mRNA_5223 0.65 +0.5
190,069 + 13591 mRNA_5223 0.67 -1.1
190,327 - 13591 mRNA_5223 0.84 +0.1
190,343 + 13591 mRNA_5223 0.85 -1.8
190,385 - 13591 mRNA_5223 0.88 -1.3
190,385 - 13591 mRNA_5223 0.88 +2.1
190,403 - 13591 mRNA_5223 0.89 -0.2
190,765 - +0.1
190,771 - +1.3
190,781 - -0.1
190,879 + -0.9
190,941 - +0.1
190,943 + -1.6
190,960 + -1.1
191,055 + 13592 mRNA_5224 0.11 +0.2
191,086 + 13592 mRNA_5224 0.13 -0.0
191,096 - 13592 mRNA_5224 0.14 +0.0
191,104 - 13592 mRNA_5224 0.14 -0.1
191,117 + 13592 mRNA_5224 0.15 -0.2
191,197 + 13592 mRNA_5224 0.20 -1.3
191,232 - 13592 mRNA_5224 0.23 +0.5
191,266 + 13592 mRNA_5224 0.25 -2.2
191,282 + 13592 mRNA_5224 0.26 +0.2
191,639 - 13592 mRNA_5224 0.51 -0.4
191,666 + 13592 mRNA_5224 0.52 +0.0
191,695 + 13592 mRNA_5224 0.54 +0.7
191,823 + 13592 mRNA_5224 0.63 +2.4
191,827 - 13592 mRNA_5224 0.63 -1.0
191,981 - 13592 mRNA_5224 0.74 +0.3
191,992 + 13592 mRNA_5224 0.75 +1.5
192,170 + 13592 mRNA_5224 0.87 +1.0
192,188 + 13592 mRNA_5224 0.88 +0.6
192,191 + 13592 mRNA_5224 0.88 -0.0
192,194 + 13592 mRNA_5224 0.88 +0.6
192,200 - 13592 mRNA_5224 0.89 +0.9
192,255 + -0.1
192,276 - +0.1
192,289 - -0.9
192,290 + -1.0
192,416 - +2.2
192,423 - +2.5
192,433 - +1.4
192,435 + +2.1
192,439 - -0.2
192,500 + +0.3
192,609 - +0.6
192,714 + +0.4
192,763 - -1.2
192,876 + -0.9
193,022 + 13593 mRNA_5225 0.11 -0.7
193,032 - 13593 mRNA_5225 0.11 -1.9
193,053 + 13593 mRNA_5225 0.11 +0.4
193,193 + 13593 mRNA_5225 0.15 -1.2
193,281 - 13593 mRNA_5225 0.17 +0.2
193,295 - 13593 mRNA_5225 0.18 +2.0

Or see this region's nucleotide sequence