Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5247

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13614 and 13615 are separated by 296 nucleotides13615 and 13616 are separated by 804 nucleotides mRNA_5246: 13614 - K00411 UQCRFS1, RIP1, petA ubiquinol-cytochrome c reductase iron-sulfur subunit, at 255,112 to 256,642 13614 mRNA_5247: 13615 - HMMPfam-Basic region leucine zipper-PF07716,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 256,939 to 258,074 13615 mRNA_5248: 13616 - KOG2084 Predicted histone tail methylase containing SET domain, at 258,879 to 260,199 13616

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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256,671 - -0.1
256,993 + -0.6
257,005 - +0.6
257,555 - 13615 mRNA_5247 0.54 +1.4
257,584 - 13615 mRNA_5247 0.57 -1.1
257,755 + 13615 mRNA_5247 0.72 +0.2
257,889 + 13615 mRNA_5247 0.84 +0.1
258,058 - +1.2
258,756 + -1.3
258,790 + -0.2
259,047 - 13616 mRNA_5248 0.13 +1.4
259,049 - 13616 mRNA_5248 0.13 -0.5

Or see this region's nucleotide sequence