Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5249

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13616 and 13617 are separated by 449 nucleotides mRNA_5248: 13616 - KOG2084 Predicted histone tail methylase containing SET domain, at 258,879 to 260,199 13616 mRNA_5249: 13617 - K01535 PMA1, PMA2 H+-transporting ATPase, at 260,649 to 264,628 13617

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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259,722 + 13616 mRNA_5248 0.64 -0.1
259,896 - 13616 mRNA_5248 0.77 +1.0
259,934 - 13616 mRNA_5248 0.80 +0.7
259,945 - 13616 mRNA_5248 0.81 +0.7
259,983 + 13616 mRNA_5248 0.84 -0.1
260,019 - 13616 mRNA_5248 0.86 +0.6
260,080 + +0.2
260,084 + +0.8
260,088 + +0.1
260,239 - -0.3
260,348 - -0.4
260,364 - -2.1
260,390 + +1.6
260,516 + -1.7
260,553 + -3.3
264,249 - -0.4
264,671 - -0.9
264,673 - -2.9
264,675 + -1.8
264,677 - -1.2
264,680 + -1.2
264,684 - -0.9
264,685 + -3.0
264,685 - -1.9
264,686 + -2.7
264,687 - -1.1
264,691 - -3.2
264,695 - -1.5
264,698 - -0.7
264,701 - -1.1
264,705 + +1.1
264,706 - -0.1
264,709 + -1.6
264,712 - -3.7
264,713 - -0.1
264,714 + +1.0
264,716 - -1.0
264,726 + -1.0
264,728 - -2.2
264,732 - -0.1
264,738 + -3.2
264,740 - +0.7
264,740 + -0.3
264,753 + +0.5
264,757 - -1.8
264,773 + -1.0
264,773 - -2.1
264,784 + -3.1
264,796 + -0.5
264,806 - -0.1
264,836 - -2.1
264,846 - +0.3
264,847 - -1.4
264,849 - +1.4
264,853 + -2.8
264,854 - -1.9
264,857 - +1.2
264,858 - -0.8
264,858 + -0.0
264,859 - -0.9
264,869 - -0.6
264,870 - -0.3
264,870 - -3.7
264,871 - -0.4
264,872 + -1.0
264,874 - -1.5
264,874 - -1.6
264,875 - -0.1
264,878 - +0.1
264,879 + -0.6
264,881 + -0.3
264,881 + -0.5
264,888 - -1.8
264,889 - +0.7
264,890 - +2.0
264,891 + +0.1
264,892 + -0.6
264,893 - -0.1
264,893 - -0.3
264,894 + +0.0
264,894 + -1.4
264,895 - -0.1
264,900 + +1.0
264,902 - +1.6
264,902 + +0.4
264,906 + -0.6
264,907 - -0.7
264,909 + +0.3
264,911 - -0.7
264,929 + +0.2
264,948 - +0.4
264,948 - -0.4
264,948 - -0.9
264,948 - +0.8
264,952 + -1.1
264,956 - -0.1
264,957 + -0.8
264,971 - -1.2
264,971 - -1.4
264,971 - +0.4
264,971 - +1.0
264,972 + +0.6
264,974 + +0.6
264,976 - +0.1
264,979 + -1.2
264,979 + -0.1
264,981 - +0.2
264,982 + +0.5
264,983 - -0.7
264,983 + +0.2
264,986 + -0.1
264,986 + -1.0
264,986 + +1.6
264,988 - +0.7
264,993 - -3.3
265,030 + +1.4
265,041 - -3.2
265,118 + -2.6
265,125 + -0.3
265,139 + +1.2
265,146 + +0.4
265,150 + +0.4
265,157 - -0.4
265,160 - -0.1
265,165 + -0.3
265,172 + +0.7
265,174 - +1.5
265,175 - -0.2
265,176 + -0.4
265,176 - -1.3
265,189 - +2.0
265,203 + -0.3
265,218 - -0.5
265,228 - -0.2
265,233 + -1.0
265,236 + +1.3
265,272 - -0.5
265,319 - -0.1
265,322 + -1.7
265,329 - +0.1
265,340 + -1.1
265,351 + -1.3
265,363 + -0.3
265,433 - +1.0
265,441 + +0.7
265,453 - +0.5
265,457 - +0.9
265,459 + +1.4
265,461 - +0.4
265,462 - +0.2
265,464 - +1.6
265,465 - +0.6
265,469 + -0.1
265,471 + +0.6
265,472 - -0.1
265,478 - +0.4
265,481 + -0.4
265,484 + +1.5
265,485 + +1.0
265,486 + +1.1
265,488 + +0.1
265,498 - -0.6
265,503 - +0.8
265,509 + -0.6
265,510 - -0.4
265,510 - -0.7
265,520 + -0.0
265,521 + -3.6
265,525 + +1.6
265,530 - -0.8
265,531 - +0.9
265,532 - +0.9
265,534 + -1.4
265,535 - +0.2
265,536 + -0.4
265,542 + -0.2
265,548 + +0.6
265,548 - -0.0
265,592 - +0.4
265,597 - -2.5
265,603 + -0.1
265,604 - -0.4
265,606 + +0.2
265,608 - +0.1
265,622 + -0.7

Or see this region's nucleotide sequence