Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5262

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13629 and 13630 are separated by 836 nucleotides13630 and 13631 are separated by 465 nucleotides mRNA_5261: 13629 - K01173 ENDOG endonuclease G, mitochondrial, at 304,388 to 306,039 13629 mRNA_5262: 13630 - K00161 PDHA, pdhA pyruvate dehydrogenase E1 component alpha subunit, at 306,876 to 308,801 13630 mRNA_5263: 13631 - BLAST pyruvate dehydrogenase E1 component subunit alpha [Mi..., at 309,267 to 309,581 13631

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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306,084 + -0.8
306,360 - +1.3
306,560 + +0.4
306,689 + +0.0
306,705 - +0.3
308,859 - +0.3
308,863 - -0.9
308,870 + +0.5
308,870 + -1.0
308,883 + -0.8
309,135 + +0.2
309,159 - -0.8
309,174 - +1.3
309,201 + +1.2
309,298 - +0.3
309,311 - 13631 mRNA_5263 0.14 +0.4
309,440 - 13631 mRNA_5263 0.55 -0.4
309,452 + 13631 mRNA_5263 0.59 +0.3
309,462 - 13631 mRNA_5263 0.62 -0.6
309,768 + -2.0
309,782 + -0.0
309,784 - -1.5

Or see this region's nucleotide sequence