Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5265

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13632 and 13633 are separated by 454 nucleotides mRNA_5264: 13632 - Hypothetical Protein, at 310,145 to 311,167 13632 mRNA_5265: 13633 - K18749 LSM14, RAP55, SCD6 protein LSM14, at 311,622 to 313,606 13633

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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310,652 - 13632 mRNA_5264 0.50 -0.1
310,979 + 13632 mRNA_5264 0.82 +1.2
311,506 - -0.1
311,523 + -0.0
311,542 - +2.7
311,544 + +0.6
311,680 + -0.5
311,684 - +0.5
311,695 + -1.2
311,819 - +0.3
311,820 - -0.7
311,846 + 13633 mRNA_5265 0.11 +0.9
311,855 + 13633 mRNA_5265 0.12 +1.1
312,021 + 13633 mRNA_5265 0.20 -1.1
312,411 - 13633 mRNA_5265 0.40 +1.2
312,547 - 13633 mRNA_5265 0.47 +1.0
312,864 + 13633 mRNA_5265 0.63 +1.4
313,007 - 13633 mRNA_5265 0.70 +1.5
313,188 + 13633 mRNA_5265 0.79 -0.9
313,326 + 13633 mRNA_5265 0.86 +0.6
313,743 - -1.0
313,951 + -1.5
314,053 + -0.5
314,067 - +0.3
314,229 + -2.0

Or see this region's nucleotide sequence