Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5288

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13655 and 13656 are separated by 303 nucleotides13656 and 13657 are separated by 103 nucleotides mRNA_5287: 13655 - KOG0835 Cyclin L, at 361,446 to 362,639 13655 mRNA_5288: 13656 - HMMPfam-Complex I intermediate-associated protein 30 (CIA30)-PF08547,SUPERFAMILY--SSF49785, at 362,943 to 363,833 13656 mRNA_5289: 13657 - K00344 qor, CRYZ NADPH2-quinone reductase, at 363,937 to 365,504 13657

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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362,071 - 13655 mRNA_5287 0.52 -0.4
362,678 + +0.4
362,931 - +3.9
362,962 + -1.3
363,068 - 13656 mRNA_5288 0.14 +1.4
363,113 + 13656 mRNA_5288 0.19 -1.1
363,197 - 13656 mRNA_5288 0.29 -0.0
363,574 + 13656 mRNA_5288 0.71 +0.2
363,655 + 13656 mRNA_5288 0.80 -0.2
363,716 - 13656 mRNA_5288 0.87 -0.5
363,766 + +0.2
364,061 - -0.9
364,259 + 13657 mRNA_5289 0.21 -0.7
364,403 + 13657 mRNA_5289 0.30 -0.2
364,518 + 13657 mRNA_5289 0.37 -0.2
364,645 - 13657 mRNA_5289 0.45 -0.1

Or see this region's nucleotide sequence