Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5312

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13679 and 13680 are separated by 484 nucleotides13680 and 13681 are separated by 450 nucleotides mRNA_5311: 13679 - Hypothetical Protein, at 427,613 to 428,578 13679 mRNA_5312: 13680 - K18182 COX16 cytochrome c oxidase assembly protein subunit 16, at 429,063 to 429,953 13680 mRNA_5313: 13681 - KOG0108 mRNA cleavage and polyadenylation factor I complex, subunit RNA15, at 430,404 to 433,324 13681

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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428,068 - 13679 mRNA_5311 0.47 +0.3
428,075 + 13679 mRNA_5311 0.48 -0.8
428,106 - 13679 mRNA_5311 0.51 +0.2
428,203 + 13679 mRNA_5311 0.61 +0.5
428,218 - 13679 mRNA_5311 0.63 +0.3
428,251 - 13679 mRNA_5311 0.66 -1.3
428,453 + 13679 mRNA_5311 0.87 -1.4
428,468 - 13679 mRNA_5311 0.89 +1.2
428,487 + +0.7
428,635 + -0.9
428,650 + +0.6
428,654 - -0.7
428,664 + +2.6
428,671 - -0.1
428,705 + +1.1
428,720 - +1.9
428,778 - -0.1
428,779 + +0.3
428,781 + +2.0
428,783 + -0.0
428,785 + +0.3
428,787 - +0.9
428,797 - -2.4
428,799 + -3.5
428,800 - +0.4
428,802 - -1.5
428,818 - +1.0
428,819 - -2.7
428,824 - +1.6
428,825 + +1.9
428,827 + +0.5
428,829 + +0.8
428,830 - -2.1
428,836 - +0.3
428,837 + +0.4
428,846 - -1.1
428,898 + +1.4
428,973 + +0.8
429,021 - -1.4
429,874 + -4.1
429,876 + -3.1
430,139 - -0.4
430,149 - +0.2
430,150 + -0.1
430,155 - +0.3
430,157 - -1.0
430,162 + -0.3
430,165 + +0.6
430,166 + +1.3
430,167 + +0.5
430,171 - -0.5
430,176 - +0.5
430,180 + -0.1
430,207 + +0.5
430,296 + -1.5
430,298 - +0.2
430,326 + +0.3
430,550 - +1.7
430,734 + 13681 mRNA_5313 0.11 +1.3
430,849 - 13681 mRNA_5313 0.15 -0.1

Or see this region's nucleotide sequence