Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5323

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13690 and 13691 are separated by 373 nucleotides13691 and 13692 are separated by 140 nucleotides mRNA_5322: 13690 - K01120 cpdP 3',5'-cyclic-nucleotide phosphodiesterase, at 452,870 to 455,692 13690 mRNA_5323: 13691 - K10842 MNAT1 CDK-activating kinase assembly factor MAT1, at 456,066 to 457,717 13691 mRNA_5324: 13692 - KOG2852 Possible oxidoreductase, at 457,858 to 459,287 13692

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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455,153 - 13690 mRNA_5322 0.81 +0.1
455,297 - 13690 mRNA_5322 0.86 +0.4
455,474 + -0.4
455,748 - +0.3
455,768 - -1.1
455,776 + -1.3
455,787 + +1.2
455,807 + +0.1
457,759 + +1.9
457,780 - -0.1
457,784 - +0.6
457,785 - -0.6
457,798 + -0.3
457,887 + +0.7
457,929 - +0.3
458,084 + 13692 mRNA_5324 0.16 -1.3
458,116 + 13692 mRNA_5324 0.18 +1.5
458,324 + 13692 mRNA_5324 0.33 -0.3
458,535 - 13692 mRNA_5324 0.47 -0.6
458,668 + 13692 mRNA_5324 0.57 +0.2
458,698 - 13692 mRNA_5324 0.59 -1.1

Or see this region's nucleotide sequence