Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5333

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13700 and 13701 are separated by 235 nucleotides13701 and 13702 are separated by 246 nucleotides mRNA_5332: 13700 - K01904 4CL 4-coumarate--CoA ligase, at 475,424 to 477,955 13700 mRNA_5333: 13701 - ProSiteProfiles-Ribonuclease III family domain profile.-PS50142,SUPERFAMILY--SSF69065, at 478,191 to 479,250 13701 mRNA_5334: 13702 - K14563 NOP1, FBL rRNA 2'-O-methyltransferase fibrillarin, at 479,497 to 481,330 13702

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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477,269 - 13700 mRNA_5332 0.73 +1.3
477,299 + 13700 mRNA_5332 0.74 +1.1
477,388 + 13700 mRNA_5332 0.78 -0.3
477,431 - 13700 mRNA_5332 0.79 +0.0
477,687 - 13700 mRNA_5332 0.89 +0.7
477,945 + +1.5
478,546 - 13701 mRNA_5333 0.33 +0.6
478,557 - 13701 mRNA_5333 0.35 +1.1
478,564 + 13701 mRNA_5333 0.35 +0.4
478,870 - 13701 mRNA_5333 0.64 -0.5
478,897 - 13701 mRNA_5333 0.67 -1.2
478,904 + 13701 mRNA_5333 0.67 +0.1
478,979 - 13701 mRNA_5333 0.74 -1.2
479,041 - 13701 mRNA_5333 0.80 -0.3
479,981 + 13702 mRNA_5334 0.26 -0.3

Or see this region's nucleotide sequence