Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5354

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13722 and 13723 are separated by 240 nucleotides mRNA_5354: 13722 - KOG0557 Dihydrolipoamide acetyltransferase, at 527,210 to 528,729 13722 mRNA_5355: 13723 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 528,970 to 530,546 13723

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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526,243 + -0.9
526,251 - +0.8
526,285 - +1.0
526,439 + -0.1
526,973 - +0.2
526,978 - +1.1
527,080 - -1.5
527,122 - -0.0
527,125 + +4.7
527,128 - -1.0
527,143 + -1.4
527,159 - -0.5
527,429 + 13722 mRNA_5354 0.14 -0.9
528,000 + 13722 mRNA_5354 0.52 -0.1
528,752 + -0.7
528,869 + +1.3
529,164 - 13723 mRNA_5355 0.12 +0.3
529,225 + 13723 mRNA_5355 0.16 +2.1
529,473 - 13723 mRNA_5355 0.32 +0.2
529,633 - 13723 mRNA_5355 0.42 +1.8

Or see this region's nucleotide sequence