Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5355

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13722 and 13723 are separated by 240 nucleotides13723 and 13724 are separated by 630 nucleotides mRNA_5354: 13722 - KOG0557 Dihydrolipoamide acetyltransferase, at 527,210 to 528,729 13722 mRNA_5355: 13723 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 528,970 to 530,546 13723 mRNA_5356: 13724 - K07748 E1.1.1.170, NSDHL, ERG26 sterol-4alpha-carboxylate 3-dehydrogenase (decarboxylating), at 531,177 to 533,794 13724

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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528,000 + 13722 mRNA_5354 0.52 -0.1
528,752 + -0.7
528,869 + +1.3
529,164 - 13723 mRNA_5355 0.12 +0.3
529,225 + 13723 mRNA_5355 0.16 +2.1
529,473 - 13723 mRNA_5355 0.32 +0.2
529,633 - 13723 mRNA_5355 0.42 +1.8
530,182 - 13723 mRNA_5355 0.77 +0.5
530,668 + +0.3
530,818 - -0.3
530,938 + +0.3
530,956 - +0.6
531,075 + -0.8
531,106 + -1.4

Or see this region's nucleotide sequence