Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5362

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13729 and 13730 are separated by 265 nucleotides13730 and 13731 are separated by 295 nucleotides mRNA_5361: 13729 - K00511 SQLE, ERG1 squalene monooxygenase, at 541,060 to 542,859 13729 mRNA_5362: 13730 - Hypothetical Protein, at 543,125 to 544,034 13730 mRNA_5363: 13731 - KOG0254 Predicted transporter (major facilitator superfamily), at 544,330 to 546,394 13731

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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543,014 - +0.7
543,056 + +0.5
543,061 - +0.4
543,069 + +0.2
543,083 - -0.8
543,094 + +1.0
543,117 - +0.4
543,129 + -0.3
543,166 - -0.2
543,193 - -0.3
543,194 + +0.1
543,282 + 13730 mRNA_5362 0.17 -0.6
543,318 + 13730 mRNA_5362 0.21 -0.6
543,418 - 13730 mRNA_5362 0.32 +0.6
543,625 - 13730 mRNA_5362 0.55 -0.2
543,783 - 13730 mRNA_5362 0.72 -0.3
543,816 + 13730 mRNA_5362 0.76 -0.1
543,931 + 13730 mRNA_5362 0.89 +0.4
543,931 + 13730 mRNA_5362 0.89 +0.4
543,951 - +0.6
543,959 - -0.6
543,959 + -2.8
543,970 - +0.6
544,005 - +0.2
544,007 - -0.5
544,029 - -0.6
544,035 + +0.9
544,084 - -0.6
544,109 + -2.8
544,418 - -0.7
544,761 + 13731 mRNA_5363 0.21 -0.4

Or see this region's nucleotide sequence