Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5373

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13741 and 13742 are separated by 74 nucleotides mRNA_5373: 13741 - Hypothetical Protein, at 571,063 to 571,885 13741 mRNA_5374: 13742 - KOG0001 Ubiquitin and ubiquitin-like proteins, at 571,960 to 573,012 13742

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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570,064 + -1.1
570,120 - -0.9
570,270 + +0.4
570,271 + -0.1
570,271 - -0.0
570,397 - +1.4
570,555 - +0.7
570,569 + -3.6
570,582 - -2.2
570,692 - +0.2
570,709 - -1.1
570,849 - +0.6
571,017 + +0.1
571,145 + -0.0
571,155 - 13741 mRNA_5373 0.11 -1.5
571,401 + 13741 mRNA_5373 0.41 -0.5
571,442 + 13741 mRNA_5373 0.46 -1.9
571,468 + 13741 mRNA_5373 0.49 -1.1
571,491 - 13741 mRNA_5373 0.52 -0.9
571,571 + 13741 mRNA_5373 0.62 -1.5
571,741 + 13741 mRNA_5373 0.82 +0.3
571,835 - -0.0
572,035 + +1.5
572,197 - 13742 mRNA_5374 0.23 -0.2
572,311 - 13742 mRNA_5374 0.33 -0.8
572,486 - 13742 mRNA_5374 0.50 +0.1
572,675 - 13742 mRNA_5374 0.68 -1.9
572,761 - 13742 mRNA_5374 0.76 -1.1
572,793 + 13742 mRNA_5374 0.79 -0.9
572,820 - 13742 mRNA_5374 0.82 -0.3

Or see this region's nucleotide sequence