Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5390

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13757 and 13758 are separated by 547 nucleotides13758 and 13759 are separated by 344 nucleotides mRNA_5389: 13757 - KOG0750 Mitochondrial solute carrier protein, at 629,263 to 631,005 13757 mRNA_5390: 13758 - K03065 PSMC3, RPT5 26S proteasome regulatory subunit T5, at 631,553 to 634,043 13758 mRNA_5391: 13759 - HMMPfam-ATP synthase j chain-PF04911, at 634,388 to 634,888 13759

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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630,690 + 13757 mRNA_5389 0.82 -0.4
631,357 + -1.8
631,465 + +0.5
631,476 - +0.3
634,081 - +0.6
634,098 + +1.0
634,151 + +0.4
634,173 + -0.4
634,893 + +0.2
634,911 + -0.9

Or see this region's nucleotide sequence