Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5435

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13802 and 13803 are separated by 117 nucleotides mRNA_5434: 13802 - KOG2852 Possible oxidoreductase, at 89,359 to 90,914 13802 mRNA_5435: 13803 - Hypothetical Protein, at 91,032 to 92,817 13803

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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90,478 + 13802 mRNA_5434 0.72 +0.1
90,582 - 13802 mRNA_5434 0.79 +0.6
90,709 - 13802 mRNA_5434 0.87 +0.2
90,798 - +0.1
91,380 + 13803 mRNA_5435 0.19 +3.2
91,467 + 13803 mRNA_5435 0.24 +1.1
91,821 - 13803 mRNA_5435 0.44 +0.5
91,943 + 13803 mRNA_5435 0.51 +0.2
92,223 - 13803 mRNA_5435 0.67 -0.0
92,253 + 13803 mRNA_5435 0.68 -0.0
92,288 - 13803 mRNA_5435 0.70 +0.9
92,408 + 13803 mRNA_5435 0.77 +1.1
92,541 + 13803 mRNA_5435 0.84 -0.2
92,553 - 13803 mRNA_5435 0.85 +0.9
92,556 - 13803 mRNA_5435 0.85 -0.6
92,656 - +0.1
92,677 - -1.0
92,740 - +0.4
92,960 - +0.1
92,989 - -2.7
93,129 - -0.2
93,137 - -1.2

Or see this region's nucleotide sequence