Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5439

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13806 and 13807 are separated by 428 nucleotides13807 and 13808 are separated by 672 nucleotides mRNA_5438: 13806 - K06867 K06867 uncharacterized protein, at 96,047 to 99,541 13806 mRNA_5439: 13807 - Hypothetical Protein, at 99,970 to 100,789 13807 mRNA_5440: 13808 - Hypothetical Protein, at 101,462 to 101,965 13808

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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98,975 - 13806 mRNA_5438 0.84 +0.9
99,163 - 13806 mRNA_5438 0.89 +0.0
99,182 + 13806 mRNA_5438 0.90 -0.1
99,253 - +2.1
99,299 - +1.0
99,543 - -0.7
99,846 + +0.9
99,855 + +1.5
99,909 + -0.4
99,912 - -0.1
100,026 - +0.3
100,046 + +0.3
100,058 - 13807 mRNA_5439 0.11 +0.0
100,727 + +0.2
100,774 + +0.2
100,880 - +0.0
100,880 - -0.6
100,904 + +1.3
100,992 - +0.6
101,374 + +0.8
101,447 - -1.4
101,471 + +0.3
101,490 - -1.1

Or see this region's nucleotide sequence