Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5442

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13809 and 13810 are separated by 847 nucleotides13810 and 13811 are separated by 144 nucleotides mRNA_5441: 13809 - Hypothetical Protein, at 102,174 to 103,025 13809 mRNA_5442: 13810 - HMMPfam-R3H domain-PF01424,HMMPfam-SUZ domain-PF12752,ProSiteProfiles-R3H domain profile.-PS51061,ProSiteProfiles-SUZ domain profile.-PS51673,SUPERFAMILY--SSF82708, at 103,873 to 106,982 13810 mRNA_5443: 13811 - KOG3085 Predicted hydrolase (HAD superfamily), at 107,127 to 108,436 13811

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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103,248 + +1.3
103,256 - -0.6
103,291 - +1.3
103,377 + -0.6
103,560 + +0.5
103,664 + +0.8
103,832 - +0.5
104,125 - -0.9
104,137 - -0.8
104,559 - 13810 mRNA_5442 0.22 -2.3
105,718 - 13810 mRNA_5442 0.59 -0.4
106,323 - 13810 mRNA_5442 0.79 -0.9
107,212 + -1.8
107,225 + +0.6
107,227 - -0.1
107,229 + +0.0
107,246 - -0.4
107,268 + 13811 mRNA_5443 0.11 -0.6
107,376 + 13811 mRNA_5443 0.19 +0.6
107,526 - 13811 mRNA_5443 0.30 -0.4
107,699 - 13811 mRNA_5443 0.44 +0.4
107,721 - 13811 mRNA_5443 0.45 +0.0
107,936 - 13811 mRNA_5443 0.62 -0.4
107,953 - 13811 mRNA_5443 0.63 -0.4
107,970 - 13811 mRNA_5443 0.64 +1.2

Or see this region's nucleotide sequence