Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5458

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13825 and 13826 are separated by 753 nucleotides13826 and 13827 are separated by 245 nucleotides mRNA_5457: 13825 - KOG2533 Permease of the major facilitator superfamily, at 132,935 to 135,021 13825 mRNA_5458: 13826 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 135,775 to 137,466 13826 mRNA_5459: 13827 - K11274 WDHD1, CTF4 chromosome transmission fidelity protein 4, at 137,712 to 142,307 13827

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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134,846 + -0.0
134,958 - +1.1
134,994 - -0.5
134,994 + +0.2
135,005 - +0.1
135,112 - -0.4
135,133 - -0.4
135,133 - +2.3
135,142 + +0.6
135,152 - +0.9
135,155 + -1.1
135,160 + -1.3
135,165 + -0.3
135,192 - -1.5
135,210 + +2.5
135,228 - -0.0
135,238 - -0.5
135,271 - -0.8
135,284 + -0.7
135,285 - -0.4
135,287 + -0.7
135,290 - +1.1
135,299 - +1.0
135,310 - -0.6
135,319 + -0.9
135,319 + +1.4
135,327 - -0.7
135,354 - +3.2
135,446 - +0.3
135,446 - -0.5
135,464 + +2.6
135,464 + +0.3
135,485 - -1.2
135,486 - +0.8
135,486 - -0.8
135,489 + +0.5
135,493 + +0.3
135,506 + -0.3
135,510 + -0.0
135,511 + +0.7
135,560 - +0.0
135,560 - +0.6
135,570 + +0.9
135,571 - +0.8
135,577 - +0.3
135,580 + -3.0
135,581 + +1.1
135,586 + +0.6
135,586 - -0.4
135,607 - -2.3
135,616 + -3.0
135,627 + +1.4
135,632 - -0.6
135,647 - +0.3
135,654 + +0.5
135,656 + -0.2
135,682 - +1.1
135,688 + -0.5
135,724 + -0.5
135,728 + -0.1
135,818 - +0.4
135,825 - -0.3
135,864 - -3.3
135,929 - -0.6
135,944 - -1.2
135,985 + 13826 mRNA_5458 0.12 +0.7
135,990 - 13826 mRNA_5458 0.13 -0.7
136,025 - 13826 mRNA_5458 0.15 +2.3
136,138 + 13826 mRNA_5458 0.21 -1.1
136,173 - 13826 mRNA_5458 0.24 +0.6
136,190 + 13826 mRNA_5458 0.25 -1.1
137,584 + +0.0
137,642 - -1.7
137,645 + +1.9
137,694 + +1.3
137,719 + +0.4
138,231 + 13827 mRNA_5459 0.11 -0.5
138,381 + 13827 mRNA_5459 0.15 -1.7

Or see this region's nucleotide sequence