Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5466

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13833 and 13834 are separated by 203 nucleotides mRNA_5465: 13833 - Hypothetical Protein, at 156,189 to 157,604 13833 mRNA_5466: 13834 - K05841 E2.4.1.173 sterol 3beta-glucosyltransferase, at 157,808 to 163,476 13834

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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157,124 - 13833 mRNA_5465 0.66 -0.9
157,294 + 13833 mRNA_5465 0.78 +0.3
157,560 - -0.2
157,561 + +0.4
158,158 + +1.3
158,223 - +0.6
158,350 + +1.3
158,450 + 13834 mRNA_5466 0.11 -0.1
158,683 + 13834 mRNA_5466 0.15 +0.9
158,807 - 13834 mRNA_5466 0.18 +0.7
158,870 + 13834 mRNA_5466 0.19 -1.4
159,108 - 13834 mRNA_5466 0.23 +3.3
159,158 - 13834 mRNA_5466 0.24 +0.9
159,233 + 13834 mRNA_5466 0.25 +0.0
159,246 + 13834 mRNA_5466 0.25 +0.1
159,326 + 13834 mRNA_5466 0.27 -1.8
159,530 - 13834 mRNA_5466 0.30 +0.8
159,707 - 13834 mRNA_5466 0.33 +1.2
159,892 - 13834 mRNA_5466 0.37 +0.6
160,120 - 13834 mRNA_5466 0.41 -0.8
160,298 - 13834 mRNA_5466 0.44 +1.0
160,319 + 13834 mRNA_5466 0.44 -0.3
160,396 - 13834 mRNA_5466 0.46 -1.3
161,096 + 13834 mRNA_5466 0.58 +0.3
161,171 - 13834 mRNA_5466 0.59 -2.4
161,203 + 13834 mRNA_5466 0.60 -2.2
161,330 - 13834 mRNA_5466 0.62 -1.4
161,457 + 13834 mRNA_5466 0.64 +2.1
161,478 + 13834 mRNA_5466 0.65 +0.9
161,599 - 13834 mRNA_5466 0.67 -0.9
161,798 - 13834 mRNA_5466 0.70 +0.5
161,804 + 13834 mRNA_5466 0.70 +0.2
161,816 + 13834 mRNA_5466 0.71 +0.4
162,046 + 13834 mRNA_5466 0.75 +1.4
162,061 + 13834 mRNA_5466 0.75 -2.0
162,102 + 13834 mRNA_5466 0.76 +2.1
162,387 - 13834 mRNA_5466 0.81 +0.0
162,938 - +0.4
163,068 + +0.5
163,075 + +1.4
163,119 + +1.7
163,220 + +0.0
163,377 - +1.1
163,385 - -0.2
163,386 + +0.3
163,413 - +0.0
163,479 - -0.9
163,521 + +1.4
163,523 + -0.5
163,676 + +0.7
163,680 + +0.1
163,692 + -1.0
163,699 + +0.8
163,809 + -1.3
163,818 + -1.7
163,831 + +0.8
163,835 - +0.1
163,855 - +0.0
163,857 - -0.7
163,863 + +0.1
163,943 - +0.0
163,961 + +0.7
163,992 + +0.9
163,997 + +1.7
163,998 + +0.5
164,407 - +0.7

Or see this region's nucleotide sequence