Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5480

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13848 and 13849 are separated by 467 nucleotides mRNA_5480: 13848 - Hypothetical Protein, at 198,378 to 198,864 13848 mRNA_5481: 13849 - KOG2710 Rho GTPase-activating protein, at 199,332 to 200,672 13849

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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197,634 + +0.0
197,780 - +0.2
197,909 - -0.2
197,911 + +0.3
198,057 - -0.2
198,224 - -0.8
198,358 - +1.3
198,636 + 13848 mRNA_5480 0.53 -0.1
198,651 + 13848 mRNA_5480 0.56 +2.4
198,698 - 13848 mRNA_5480 0.66 +0.4
198,782 - 13848 mRNA_5480 0.83 -0.7
198,788 - 13848 mRNA_5480 0.84 +0.7
198,797 - 13848 mRNA_5480 0.86 +0.5
198,811 - 13848 mRNA_5480 0.89 +1.2
198,989 + -1.1
199,095 + -0.9
199,335 - +1.2
199,392 + +1.5
199,480 + 13849 mRNA_5481 0.11 -0.4
199,514 - 13849 mRNA_5481 0.14 +0.4
199,644 - 13849 mRNA_5481 0.23 +0.4
199,684 - 13849 mRNA_5481 0.26 +0.4
199,812 + 13849 mRNA_5481 0.36 +1.3

Or see this region's nucleotide sequence