Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5490

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13857 and 13858 are separated by 119 nucleotides13858 and 13859 are separated by 353 nucleotides mRNA_5489: 13857 - KOG1263 Multicopper oxidases, at 217,387 to 219,494 13857 mRNA_5490: 13858 - Hypothetical Protein, at 219,614 to 220,900 13858 mRNA_5491: 13859 - Hypothetical Protein, at 221,254 to 222,129 13859

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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218,730 - 13857 mRNA_5489 0.64 -1.4
218,770 + 13857 mRNA_5489 0.66 -1.0
219,190 + 13857 mRNA_5489 0.86 -0.9
219,208 + 13857 mRNA_5489 0.86 -0.3
219,534 - +0.5
219,652 - -0.4
219,704 - +0.3
219,883 + 13858 mRNA_5490 0.21 +0.5
220,139 + 13858 mRNA_5490 0.41 -0.3
220,274 + 13858 mRNA_5490 0.51 +0.1
220,298 + 13858 mRNA_5490 0.53 -1.4
220,301 - 13858 mRNA_5490 0.53 +0.1
220,408 - 13858 mRNA_5490 0.62 -0.5
220,657 + 13858 mRNA_5490 0.81 -1.3
220,938 + +0.5
220,990 - +0.6
220,990 - -0.9
221,161 + +0.0
221,173 + +1.2
221,178 - -0.7
221,408 + 13859 mRNA_5491 0.18 -0.7
221,741 + 13859 mRNA_5491 0.56 +0.8

Or see this region's nucleotide sequence