Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5493

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13860 and 13861 are separated by 429 nucleotides13861 and 13862 are separated by 244 nucleotides mRNA_5492: 13860 - K15436 TRPO3, MTR10 transportin-3, at 223,260 to 226,500 13860 mRNA_5493: 13861 - KOG0297 TNF receptor-associated factor, at 226,930 to 227,786 13861 mRNA_5494: 13862 - KOG1119 Mitochondrial Fe-S cluster biosynthesis protein ISA2 (contains a HesB-like domain), at 228,031 to 229,041 13862

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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226,592 + -1.0
226,608 - +0.3
226,611 + +0.3
226,612 + +0.1
226,613 - -0.7
226,623 + +0.5
226,756 - -0.9
227,066 + 13861 mRNA_5493 0.16 +2.2
227,196 + 13861 mRNA_5493 0.31 +0.6
227,211 + 13861 mRNA_5493 0.33 +0.1
227,232 + 13861 mRNA_5493 0.35 +0.7
227,489 - 13861 mRNA_5493 0.65 -1.5
227,536 - 13861 mRNA_5493 0.71 -0.2

Or see this region's nucleotide sequence