Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5507

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13874 and 13875 are separated by 98 nucleotides mRNA_5506: 13874 - KOG2504 Monocarboxylate transporter, at 257,318 to 259,586 13874 mRNA_5507: 13875 - KOG0134 NADH-flavin oxidoreductase/12-oxophytodienoate reductase, at 259,685 to 261,151 13875

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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258,821 + 13874 mRNA_5506 0.66 +1.1
259,182 - 13874 mRNA_5506 0.82 +1.5
259,451 + -0.3
259,895 - 13875 mRNA_5507 0.14 -1.7
260,510 + 13875 mRNA_5507 0.56 -1.6
261,355 + +0.6
261,356 - -1.8
261,358 + -0.3
261,358 - +1.6
261,365 + -0.2
261,517 - +0.7
261,525 + -0.3
261,546 + -0.4
261,564 + -0.8
261,653 - +1.0
261,828 - +0.2
262,128 - -0.3

Or see this region's nucleotide sequence